Protein Information

Protein ZmMADS42
ZmMADS42 is a protein in the MADS family.
Information
TF Name:	ZmMADS42
Species:	Maize
TF Family:	MADS
Gene Name(Synonym):	MADS42
Uniprot ID:	C0HG35

Overview of domains present in v5 transcripts
	PF00319
Zm00001eb357980_T001

Gene ID	Type	Sequence	FIMO	Position
Zm00001d011323	DAPseq	sequence	fimo	position
Zm00001d011323	DAPseq	sequence	fimo	position
Zm00001d011323	ChIPseq	sequence	fimo	position
Zm00001d011323	PChIPseq	sequence	fimo	position

Zm00001eb357980_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MMARRDRRSGVRFIEDGRDRSLTFFKRRSGLFKAASDLSTLTGARVAVVLESESGRFSSFGTPEASPIVDAFLLGSAPTD
LDTSEADKASITNLQNEVFQLEKDKAMEDKRRKESLARSSRKVQQASKVARYVYGSVDDLDATELFEMYRELSRVQQEIS
DRLPTTLLHDASKADAGGGRGRLRDPSLLRPTWWRASAMPLPPLQQAATPPTKCPPWAPSQARFQFQQHPWAASSTSPPA
VLPRSSGSPLPSSAILPSPLAPQNPSFLRHHHPLAPHTTPPTSAGVQFQAPRTPAPTEAQNPYTYYIRGIDIISGNSSHP
SSLSPVMPSSSPTPHQQPSSLRAPPSDDSSPLSLSPRVSYPLHVGSPYHQQLPLSAQNHNSVQQPPPPPESCAHVVGSPL
IVHSHQVFYSNLSPDLNAELGSVDDGGAGATHADGGLGLSSPQQSDGFDGVTPNKSFSAGQSSGSGWW

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF00319
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Nucleotide Sequence
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GACGGATCGTATCGTAGTACTAGTA...

GRMZM2G375707_T01 from maize genome v3

Related TFome: pUT5787

Amino Acid Sequence
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MMARRDRRSGVRFIEDGRDRSLTFFKRRSGLFKAASDLSTLTGARVAVVLESESGRFSSFGTPEASPIVDAFLLGSAPTD
LDTSEADKASITNLQNEVFQLEKDKAMEDKRRKESLARSSRKVQQASKVARYVYGSVDDLDATELFEMYRELSRVQQEIS
DRLPTTLLHDASKADAGGGRGRLRDPSLLRPTWWRASAMPLPPLQQAATPPTKCPPWAPSQARFQFQQHPWAASSTSPPA
VLPRSSGSPLPSSAILPSPLAPQNPSFLRHHHPLAPHTTPPTSAGVQFQAPRTPAPTEAQNPYTYYIRGIDIISGNSSHP
SSLSPVMPSSSPTPHQQPSSLRAPPSDDSSPLSLSPRVSYPLHVGSPYHQQLPLSAQNHNSVQQPPPPPESCAHVVGSPL
IVHSHQVFYSNLSPDLNAELGSVDDGGAGATHADGGLGLSSPQQSDGFDGVTPNKSFSAGQSSGSGWW

Nucleotide Sequence
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ATGATGGCGAGGAGGGACAGGAGGT...

Zm00001d011323_T001 from maize genome v4

Amino Acid Sequence
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MMARRDRRSGVRFIEDGRDRSLTFFKRRSGLFKAASDLSTLTGARVAVVLESESGRFSSFGTPEASPIVDAFLLGSAPTD
LDTSEADKASITNLQNEVFQLEKDKAMEDKRRKESLARSSRKVQQASKVARYVYGSVDDLDATELFEMYRELSRVQQEIS
DRLPTTLLHDASKADAGGGRGRLRDPSLLRPTWWRASAMPLPPLQQAATPPTKCPPWAPSQARFQFQQHPWAASSTSPPA
VLPRSSGSPLPSSAILPSPLAPQNPSFLRHHHPLAPHTTPPTSAGVQFQAPRTPAPTEAQNPYTYYIRGIDIISGNSSHP
SSLSPVMPSSSPTPHQQPSSLRAPPSDDSSPLSLSPRVSYPLHVGSPYHQQLPLSAQNHNSVQQPPPPPESCAHVVGSPL
IVHSHQVFYSNLSPDLNAELGSVDDGGAGATHADGGLGLSSPQQSDGFDGVTPNKSFSAGQSSGSGWW

Nucleotide Sequence
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ATGATGGCGAGGAGGGACAGGAGGT...

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Protein ZmMADS42

Protein-DNA Interactions

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Interactions where ZmMADS42 is the regulator

Interactions where ZmMADS42 is the target
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Zm00001eb357980_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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GRMZM2G375707_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Zm00001d011323_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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